CDS

Accession Number TCMCG007C05447
gbkey CDS
Protein Id XP_009127990.1
Location join(3600974..3600992,3601932..3602921,3603234..3604198)
Gene LOC103852843
GeneID 103852843
Organism Brassica rapa

Protein

Length 657aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009129742.3
Definition VIN3-like protein 2 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description VEL1 Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0001666        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005677        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0007623        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010048        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0017053        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0031056        [VIEW IN EMBL-EBI]
GO:0031058        [VIEW IN EMBL-EBI]
GO:0031060        [VIEW IN EMBL-EBI]
GO:0031062        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031399        [VIEW IN EMBL-EBI]
GO:0031401        [VIEW IN EMBL-EBI]
GO:0031519        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032270        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032922        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0035064        [VIEW IN EMBL-EBI]
GO:0036293        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042393        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045814        [VIEW IN EMBL-EBI]
GO:0048511        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048587        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051247        [VIEW IN EMBL-EBI]
GO:0051569        [VIEW IN EMBL-EBI]
GO:0051570        [VIEW IN EMBL-EBI]
GO:0051571        [VIEW IN EMBL-EBI]
GO:0051574        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061085        [VIEW IN EMBL-EBI]
GO:0061087        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070417        [VIEW IN EMBL-EBI]
GO:0070482        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090568        [VIEW IN EMBL-EBI]
GO:0140030        [VIEW IN EMBL-EBI]
GO:0140034        [VIEW IN EMBL-EBI]
GO:1900109        [VIEW IN EMBL-EBI]
GO:1900111        [VIEW IN EMBL-EBI]
GO:1902275        [VIEW IN EMBL-EBI]
GO:1905269        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000028        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2001252        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATTCTTCTCTCGATGGAGCAGCAGGTGACTCATCAAAATGCAGTCAAATGAGTGTTGATGAGAAGAGACAGCTTGTCTATGATCTCTCCAAGCAATCACACCTAGCTACCGAAGTGTTGCAGGCATGGAGCCGGCAAGAGATTCTACAGATCCTATGCGCTGAAATGGGCAAAGAGAGAAAGTACACTGGCTTGACCAAAGTCAAGATCATCGAAGCTCTTCTGAAACTTGTATCCGAGAAAAACTCCGGAGACTATGATGAGAATAACAAGAAGAACAAGAAGAAGAGAGATTCTGAATGTTTGCCTGTTCAGAGACACACAAAGAGACAAAGGAAAGTCGATGAACCTACTCGTTATGTGGCTCCAACTAGTAACAACAATTCCTCCGGGAGCTGCAACAATGCTGTCTACTGCAACAACTTGGCTTGCAGGGCTATATTGAGAGAGGGAGACTCGTTCTGCAGAAGGTGTTCTTGTTGCATTTGCCGTAAGTATGATGATAACAAAGACCCTAGTCTCTGGTTAACATGCAGCTCAGACCCTCCCTTTGAAGGTGATTCTTGCGGATTCTCTTGTCATCTTGAATGTGCTTTCGAGAGTGAAAAGTCTGGTCTTAAGGAAAGTGAGGGTGGTTGCTGCTTCTACTGCGTCTCTTGCGGTAAACCAAACAGCTTGCTTGAGTGTTGGAAGAAGCAACTGACTATTGCTAGAGAAACCAGAAGGGTGGATGTGCTTTGCTACCGTCTTTTATTAGTCCAGAAGCTTACAAAGGGCTCTAGTAAGTACCGGAACCTGTGTGAGGCTGTTGATGAAGCTGTGAAGAGTCTTGAAGCTGATGTGGGTCCTCTCACTGGTCTCCCTTTGAAAATGGGTAGAGGGATTGTGAACAGACTACAATCAGGACCTGATGTGCAGAAACTTTGCTCTTCTGCTCTTGAATCTCTTGAAACACCTCCTGAAGTTGCTGCATTGCCTTCACAACGCAGCTCCAAGATGCAGCACGATTGTTATCATGGACTGAACAATGAGGTGTCTGCAGATACAGCAACCACAGTATCAACCAAGATCAGATTCGAGGATGTTAACGCCACTTCACTCACTGTGATTCTAGCCTCCAATGAAGTCACCTCACCTGGGAACATCGTTCATTACAGTATCTGGCATCGTAAGGCCACTGAGAAAGAGTACCAGGAGAAGTCAACTTGCACATTGTTTACACCAAACGCGAGATTTGTTGTCTCTGGATTAGCTCCAGCTTCTGAGTATTGCTTCAAAGTCGTGTCCTATAGCGGAACACGAGAGCTTGGAGTGGATGAGATCAATGTCTTGACGCGTAATGAAGAAGAAAGAAGCGAGAGCCCTCTCACGAACTGCAGCACGTTGTCTTCTAACCCTTCTTCTGTTGAAGCTGAGTCCAACAACGGTTACATTGTTCCTCAGAACGAGATAAAAAATTCTCCTACTGATGAGAATGCTGCTAAAAGGACAACAGAGATTGTGCAGACTGAGAAGAAAGAAGCTGTTCCAGACAAGAACAGAGAAACTCTAAACCCGGTTACTACGACAAATCTTTTGCCTATTACTCCCTTCAGGTCAGACCAAACCAAGAACCGTCAAGCTAGAAAAGGAAAGTCTGTTAAAGAAAACGGTGATCATCATTCAGCAAACGGAGGATCAGAGAGCGGTTTAGAGCATTGTGTGAAGATCATAAGACAGCTCGAATGTTCAGGACACATTGAGAAAGAGTTCAGACAGAAGTTTCTGACTTGGTATGGCTTGAGAGCGACGCCACAAGAGATTAGAGTTGTGAAGATATTTATAGATACCTTTGCTGATGATCCCGTGGCTTTAGCTGAGCAGCTTATTCATAGTTTCAGCGACCGCGTTTCGAGTAAGCGTTCTGCGATTGGTGGTGGTGGTGCGTCTGCGGTTGTTCAGTCTGGTTTCTGCATGAAGTTATGGCATTAG
Protein:  
MDSSLDGAAGDSSKCSQMSVDEKRQLVYDLSKQSHLATEVLQAWSRQEILQILCAEMGKERKYTGLTKVKIIEALLKLVSEKNSGDYDENNKKNKKKRDSECLPVQRHTKRQRKVDEPTRYVAPTSNNNSSGSCNNAVYCNNLACRAILREGDSFCRRCSCCICRKYDDNKDPSLWLTCSSDPPFEGDSCGFSCHLECAFESEKSGLKESEGGCCFYCVSCGKPNSLLECWKKQLTIARETRRVDVLCYRLLLVQKLTKGSSKYRNLCEAVDEAVKSLEADVGPLTGLPLKMGRGIVNRLQSGPDVQKLCSSALESLETPPEVAALPSQRSSKMQHDCYHGLNNEVSADTATTVSTKIRFEDVNATSLTVILASNEVTSPGNIVHYSIWHRKATEKEYQEKSTCTLFTPNARFVVSGLAPASEYCFKVVSYSGTRELGVDEINVLTRNEEERSESPLTNCSTLSSNPSSVEAESNNGYIVPQNEIKNSPTDENAAKRTTEIVQTEKKEAVPDKNRETLNPVTTTNLLPITPFRSDQTKNRQARKGKSVKENGDHHSANGGSESGLEHCVKIIRQLECSGHIEKEFRQKFLTWYGLRATPQEIRVVKIFIDTFADDPVALAEQLIHSFSDRVSSKRSAIGGGGASAVVQSGFCMKLWH